add link to information on how to make qmd files

Author: timothypratley

.github/workflows/render-and-publish.yml

@@ -39,7 +39,7 @@ jobs:
           restore-keys: cljdeps-
 
       - name: Build the content notebooks
-        run: clojure -M:clay -A:markdown
+        run: clojure -M:clay -A:markdown:ci
 
       - name: Set up Quarto
         uses: quarto-dev/quarto-actions/setup@v2

README.md

@@ -81,7 +81,7 @@ The published site goes through a longer process of producing markdown then HTML
 [Quarto](https://quarto.org/) is the markdown publishing tool.
 
 ```sh
-clojure -M:clay -A:markdown
+clojure -M:clay -A:markdown:ci
 ```
 
 ```sh
@@ -226,6 +226,14 @@ Future:
 
 Goal: Minimize friction in authoring while ensuring publishable reproducibility.
 
+## Large data, slow calculations, private credentials
+
+If you add a qmd file under the `site` directory,
+it will prevent the source `clj` file from executing.
+This allows you to only run the code locally.
+
+See [Some notebooks should only be run locally](https://clojurecivitas.github.io/scicloj/clay/skip_if_unchanged_example.html) for more information.
+
 ## License
 
 Copyright © 2025 Timothy Pratley

clay.edn

@@ -17,6 +17,6 @@
   :hide-info-line   false
   :quarto           []
   :flatten-targets  false
-  :keep-sync-root   false
-  :skip-if-unchanged true}}
-
+  :keep-sync-root   false}
+ :ci
+ {:keep-existing true}}

deps.edn

@@ -13,7 +13,7 @@
   clj-thamil/clj-thamil                       {:mvn/version "0.2.0"}
   org.scicloj/clay                            {#_#_:mvn/version "2-beta46"
                                                :git/url "https://github.com/scicloj/clay.git"
-                                               :git/sha "e3feb09eb9d251dccc266945e9827ee0b7e169e8"}
+                                               :git/sha "d5b6661050470fc6587ccd7c2af0449e81977504"}
   org.eclipse.elk/org.eclipse.elk.core        {:mvn/version "0.10.0"}
   org.eclipse.elk/org.eclipse.elk.graph       {:mvn/version "0.10.0"}
   org.eclipse.elk/org.eclipse.elk.graph.json  {:mvn/version "0.10.0"}