Added cloning script

Author: ParamThakkar123

Manifest.toml

@@ -2,7 +2,7 @@
 
 julia_version = "1.10.5"
 manifest_format = "2.0"
-project_hash = "cdfaa63cde653042f86555ed251b9c4641d8ee78"
+project_hash = "fe1c3697fb0d06ebc454913e1019ea85a94e594c"
 
 [[deps.ArgTools]]
 uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
@@ -54,6 +54,12 @@ git-tree-sha1 = "91d501cb908df6f134352ad73cde5efc50138279"
 uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
 version = "0.5.11"
 
+[[deps.JSON]]
+deps = ["Dates", "Mmap", "Parsers", "Unicode"]
+git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a"
+uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
+version = "0.21.4"
+
 [[deps.LibCURL]]
 deps = ["LibCURL_jll", "MozillaCACerts_jll"]
 uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
@@ -114,6 +120,12 @@ git-tree-sha1 = "cc4054e898b852042d7b503313f7ad03de99c3dd"
 uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
 version = "1.8.0"
 
+[[deps.Parsers]]
+deps = ["Dates", "PrecompileTools", "UUIDs"]
+git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821"
+uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
+version = "2.8.1"
+
 [[deps.Pkg]]
 deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
 uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"

Project.toml

@@ -2,7 +2,10 @@ name = "JuliaHealthLLM"
 authors = ["Jacob S. Zelko", "Param Thakkar"]
 
 [deps]
+Downloads = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
 DrWatson = "634d3b9d-ee7a-5ddf-bec9-22491ea816e1"
+JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
+Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7"
 
 [compat]
 DrWatson = "2.18"

scripts/clone.jl

@@ -0,0 +1,29 @@
+using LibGit2
+using Downloads
+using Printf
+
+repos = [
+    "https://github.com/JuliaHealth/MedEval3D.jl.git", #Example, can add more repos here
+]
+
+data_dir = "data/exp_raw"
+
+if !isdir(data_dir)
+    mkdir(data_dir)
+end
+
+for repo in repos
+    repo_name = split(repo, "/")[end]
+    repo_path = joinpath(data_dir, replace(repo_name, ".git" => ""))
+    
+    if isdir(repo_path)
+        @printf("Skipping %s, already cloned.\n", repo)
+    else
+        try
+            LibGit2.clone(repo, repo_path)
+            @printf("Successfully cloned %s\n", repo)
+        catch e
+            @printf("Failed to clone %s: %s\n", repo, e)
+        end
+    end
+end