Set all hyperparameters (of augmentation; size of a patch, threshold for getting binary mask from probabilities) in a struct or dictionary to enable hyperparameter tuning.

[jakubMitura14]

Success when
Probabilities and hyperparameters of all augmentations, thresholds for binarization of output channels chosen spacing for preprocessing, number and settings of test time augmentations should be available in a hyperparam struct that is the additional argument of the pipeline function and that can be used for hyperparameter tuning