From 888ecbbaa3c530acc23aafa9e53e17e9a7453936 Mon Sep 17 00:00:00 2001
From: AndyChappell <andrew.chappell@warwick.ac.uk>
Date: Thu, 5 Feb 2026 02:48:32 -0600
Subject: [PATCH 1/2] Add fcl and pandora xml to support cluster validation
 metrics in ci system

---
 .../standard/reco/ci_reco2_sbnd.fcl           |  4 ++
 .../scripts/PandoraSettings_CI_SBND.xml       | 52 +++++++++++++++++++
 2 files changed, 56 insertions(+)
 create mode 100644 sbndcode/JobConfigurations/standard/reco/ci_reco2_sbnd.fcl
 create mode 100644 sbndcode/SBNDPandora/scripts/PandoraSettings_CI_SBND.xml

diff --git a/sbndcode/JobConfigurations/standard/reco/ci_reco2_sbnd.fcl b/sbndcode/JobConfigurations/standard/reco/ci_reco2_sbnd.fcl
new file mode 100644
index 000000000..0ae1c3621
--- /dev/null
+++ b/sbndcode/JobConfigurations/standard/reco/ci_reco2_sbnd.fcl
@@ -0,0 +1,4 @@
+#include "standard_reco2_sbnd.fcl"
+
+physics.producers.pandora.ConfigFile: "PandoraSettings_CI_SBND.xml"
+physics.producers.pandora.EnableMCParticles: true
diff --git a/sbndcode/SBNDPandora/scripts/PandoraSettings_CI_SBND.xml b/sbndcode/SBNDPandora/scripts/PandoraSettings_CI_SBND.xml
new file mode 100644
index 000000000..fede0b0e7
--- /dev/null
+++ b/sbndcode/SBNDPandora/scripts/PandoraSettings_CI_SBND.xml
@@ -0,0 +1,52 @@
+<pandora>
+  <!-- GLOBAL SETTINGS -->
+  <IsMonitoringEnabled>true</IsMonitoringEnabled>
+  <ShouldDisplayAlgorithmInfo>false</ShouldDisplayAlgorithmInfo>
+  <SingleHitTypeClusteringMode>true</SingleHitTypeClusteringMode>
+
+  <!-- ALGORITHM SETTINGS -->
+  <algorithm type = "LArPreProcessing">
+    <OutputCaloHitListNameU>CaloHitListU</OutputCaloHitListNameU>
+    <OutputCaloHitListNameV>CaloHitListV</OutputCaloHitListNameV>
+    <OutputCaloHitListNameW>CaloHitListW</OutputCaloHitListNameW>
+    <FilteredCaloHitListName>CaloHitList2D</FilteredCaloHitListName>
+    <CurrentCaloHitListReplacement>CaloHitList2D</CurrentCaloHitListReplacement>
+  </algorithm>
+
+  <algorithm type = "LArMaster">
+    <CRSettingsFile>PandoraSettings_Cosmic_SBND.xml</CRSettingsFile>
+    <NuSettingsFile>PandoraSettings_Neutrino_SBND.xml</NuSettingsFile>
+    <SlicingSettingsFile>PandoraSettings_Slicing_Standard.xml</SlicingSettingsFile>
+    <StitchingTools>
+      <tool type = "LArStitchingCosmicRayMerging"><ThreeDStitchingMode>true</ThreeDStitchingMode></tool>
+      <tool type = "LArStitchingCosmicRayMerging"><ThreeDStitchingMode>false</ThreeDStitchingMode></tool>
+    </StitchingTools>
+    <CosmicRayTaggingTools>
+      <tool type = "LArCosmicRayTagging"/>
+    </CosmicRayTaggingTools>
+    <SliceIdTools>
+      <tool type = "LArBdtNeutrinoId">
+        <MvaFileName>PandoraMVAs/PandoraBdt_SBND.xml</MvaFileName>
+        <MvaName>NeutrinoId</MvaName>
+        <MinimumNeutrinoProbability>0</MinimumNeutrinoProbability>
+        <DefaultProbability>-1</DefaultProbability>
+        <MaximumNeutrinos>999</MaximumNeutrinos>
+        <PersistFeatures>true</PersistFeatures>
+      </tool>
+    </SliceIdTools>
+    <InputHitListName>CaloHitList2D</InputHitListName>
+    <RecreatedPfoListName>RecreatedPfos</RecreatedPfoListName>
+    <RecreatedClusterListName>RecreatedClusters</RecreatedClusterListName>
+    <RecreatedVertexListName>RecreatedVertices</RecreatedVertexListName>
+    <VisualizeOverallRecoStatus>false</VisualizeOverallRecoStatus>
+  </algorithm>
+
+  <algorithm type = "LArEventClusterValidation">
+    <FileName>ci_pandora_clusters.root</FileName>
+    <TreeName>pandora_clusters</TreeName>
+    <ClusterListNames>RecreatedClusters</ClusterListNames>
+    <CaloHitListNames>CaloHitList2D</CaloHitListNames>
+    <MinMCHitsPerView>5</MinMCHitsPerView>
+    <HitWeightedPurityCompleteness>true</HitWeightedPurityCompleteness>
+  </algorithm>
+</pandora>

From bcb99eed83a9a0d6bf07bec57747ed0f05119f11 Mon Sep 17 00:00:00 2001
From: AndyChappell <andrew.chappell@warwick.ac.uk>
Date: Thu, 5 Feb 2026 04:09:42 -0600
Subject: [PATCH 2/2] Add synchronisation comment to Pandora Master xml

---
 sbndcode/SBNDPandora/scripts/PandoraSettings_Master_SBND.xml | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/sbndcode/SBNDPandora/scripts/PandoraSettings_Master_SBND.xml b/sbndcode/SBNDPandora/scripts/PandoraSettings_Master_SBND.xml
index 93658e987..aefbce4da 100644
--- a/sbndcode/SBNDPandora/scripts/PandoraSettings_Master_SBND.xml
+++ b/sbndcode/SBNDPandora/scripts/PandoraSettings_Master_SBND.xml
@@ -1,3 +1,7 @@
+<!--
+    ATTN: If you modify this XML please make the corresponding change in PandoraSettings_CI_SBND.xml
+    to ensure the continuous integration workflow remains in sync with the standard workflow.
+-->
 <pandora>
   <!-- GLOBAL SETTINGS -->
   <IsMonitoringEnabled>false</IsMonitoringEnabled>