Are such commits expected to be here? It's not shown with plain git log, but:
$ git log --pretty=oneline --all
f4c2e140652c28997296aed48862fb27301cd927 "$(git config transcrypt.crypt-dir 2>/dev/null || printf %s/crypt ""$(git rev-parse --git-dir)"")"/transcrypt textconv
<rest omitted>