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Pull request #614: Upgraded three.js to version 151, and improved the image quality.
Merge in STRUC/icn3d from release3282 to master * commit '81cdd7b32ecc2820246ccdb094affafdc7c7a084': Upgraded three.js to version 151, and improved the image quality.
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‎CHANGELOG.md‎

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## Change Log
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[icn3d-3.28.2](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.28.2.zip) was release on August 23, 2023. Upgraded three.js to version 151, and improved the image quality.
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[icn3d-3.28.1](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.28.1.zip) was release on August 23, 2023. Added logs for menu usages, and updated iCn3D tutorials at https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d.html#videos.
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[icn3d-3.28.0](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.28.0.zip) was release on July 31, 2023. Added the feature to show isoforms and exons as tracks with the button "Add Track" in the "Sequences & Annotations" window via the menu "Analysis > Sequences & Annotations". Also displayed pathogenic ClinVars in red and the rest in green in the ClinVar track.

‎README.md‎

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iCn3D can be embedded in a web page by including the URL in HTML iframe, e.g. <iframe src="https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=1tup&width=300&height=300&showcommand=0&mobilemenu=1&showtitle=0" width="320" height="320" style="border:none"></iframe>. This method always shows the most recent version of iCn3D.
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To embed iCn3D with JavaScript libraries, the following libraries need to be included: jQuery, jQuery UI, Three.js, and iCn3D library. An html div tag to hold the 3D viewer is added. The iCn3D widget is initialized with the custom defined parameter "cfg": "let icn3dui = new icn3d.iCn3DUI(cfg); await icn3dui.show3DStructure();". Multiple iCn3D widgets can be embedded in a single page. Please see the source code of the [example page](https://www.ncbi.nlm.nih.gov/Structure/icn3d/example.html) for reference.
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To embed iCn3D with JavaScript libraries, the following libraries need to be included: jQuery, jQuery UI, Three.js, and iCn3D library. An html div tag to hold the 3D viewer is added. The iCn3D widget is initialized with the custom defined parameter "cfg": "let icn3dui = new icn3d.iCn3DUI(cfg); await icn3dui.show3DStructure();". Multiple iCn3D widgets can be embedded in a single page. Please see the source code of the [example page](https://www.ncbi.nlm.nih.gov/Structure/icn3d/example-simple.html) for reference.
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Users can choose to show the most recent version of iCn3D, or a locked version of iCn3D. To show the most recent version, use the library files without the version postfix as shown in the [iCn3D Doc page](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d.html#HowToUse). To show a locked version, use the library files with the version postfix as shown in the source code of [iCn3D page](https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=1tup). If the input is provided as an MMDB ID, both library files and backend cgis are versioned so that the 3D display will be stable.
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‎build/icn3d.js‎

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‎build/icn3d.min.js‎

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‎build/icn3d.module.js‎

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‎dist/CHANGELOG.md‎

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## Change Log
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[icn3d-3.28.2](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.28.2.zip) was release on August 23, 2023. Upgraded three.js to version 151, and improved the image quality.
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[icn3d-3.28.1](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.28.1.zip) was release on August 23, 2023. Added logs for menu usages, and updated iCn3D tutorials at https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d.html#videos.
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[icn3d-3.28.0](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.28.0.zip) was release on July 31, 2023. Added the feature to show isoforms and exons as tracks with the button "Add Track" in the "Sequences & Annotations" window via the menu "Analysis > Sequences & Annotations". Also displayed pathogenic ClinVars in red and the rest in green in the ClinVar track.

‎dist/README.md‎

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iCn3D can be embedded in a web page by including the URL in HTML iframe, e.g. <iframe src="https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=1tup&width=300&height=300&showcommand=0&mobilemenu=1&showtitle=0" width="320" height="320" style="border:none"></iframe>. This method always shows the most recent version of iCn3D.
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To embed iCn3D with JavaScript libraries, the following libraries need to be included: jQuery, jQuery UI, Three.js, and iCn3D library. An html div tag to hold the 3D viewer is added. The iCn3D widget is initialized with the custom defined parameter "cfg": "let icn3dui = new icn3d.iCn3DUI(cfg); await icn3dui.show3DStructure();". Multiple iCn3D widgets can be embedded in a single page. Please see the source code of the [example page](https://www.ncbi.nlm.nih.gov/Structure/icn3d/example.html) for reference.
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To embed iCn3D with JavaScript libraries, the following libraries need to be included: jQuery, jQuery UI, Three.js, and iCn3D library. An html div tag to hold the 3D viewer is added. The iCn3D widget is initialized with the custom defined parameter "cfg": "let icn3dui = new icn3d.iCn3DUI(cfg); await icn3dui.show3DStructure();". Multiple iCn3D widgets can be embedded in a single page. Please see the source code of the [example page](https://www.ncbi.nlm.nih.gov/Structure/icn3d/example-simple.html) for reference.
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Users can choose to show the most recent version of iCn3D, or a locked version of iCn3D. To show the most recent version, use the library files without the version postfix as shown in the [iCn3D Doc page](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d.html#HowToUse). To show a locked version, use the library files with the version postfix as shown in the source code of [iCn3D page](https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=1tup). If the input is provided as an MMDB ID, both library files and backend cgis are versioned so that the 3D display will be stable.
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‎dist/full.html‎

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<div id="div0"></div>
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<link rel="stylesheet" href="lib/jquery-ui-1.13.2.min.css">
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<link rel="stylesheet" href="icn3d_3.28.1.css">
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<link rel="stylesheet" href="icn3d_3.28.2.css">
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<script src="lib/jquery-3.5.0.min.js"></script>
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<script src="lib/jquery-ui-1.13.2.min.js"></script>
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<script src="lib/three_0.137.0.min.js"></script>
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<script src="icn3d_3.28.1.min.js"></script>
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<script src="lib/three_0.151.0.min.js"></script>
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<script src="icn3d_3.28.2.min.js"></script>
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<script type="text/javascript">
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alert("IE does NOT work with the current iCn3D version 3. The old iCn3D version 2 is used instead.");
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}
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else {
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//$.getScript('icn3d_3.28.1.min.js', function() {
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//$.getScript('icn3d_3.28.2.min.js', function() {
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var version = 3;
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await launchIcn3d(version); //await
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//});

‎dist/full2.html‎

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<div id="div1" style="float:left;"></div>
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<link rel="stylesheet" href="lib/jquery-ui-1.13.2.min.css">
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<link rel="stylesheet" href="icn3d_3.28.1.css">
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<link rel="stylesheet" href="icn3d_3.28.2.css">
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<script src="lib/jquery-3.5.0.min.js"></script>
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<script src="lib/jquery-ui-1.13.2.min.js"></script>
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<script src="lib/three_0.137.0.min.js"></script>
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<script src="icn3d_3.28.1.min.js"></script>
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<script src="lib/three_0.151.0.min.js"></script>
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<script src="icn3d_3.28.2.min.js"></script>
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<script type="text/javascript">
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$( document ).ready(async function() {
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alert("IE does NOT work with the current iCn3D version 3. The old iCn3D version 2 is used instead.");
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}
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else {
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//$.getScript('icn3d_3.28.1.min.js', function() {
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//$.getScript('icn3d_3.28.2.min.js', function() {
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var version = 3;
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await launchIcn3d(version);
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//});

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<div id="div1" style="float:left;"></div>
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<link rel="stylesheet" href="lib/jquery-ui-1.13.2.min.css">
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<link rel="stylesheet" href="icn3d_3.28.1.css">
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<link rel="stylesheet" href="icn3d_3.28.2.css">
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<script src="lib/jquery-3.5.0.min.js"></script>
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<script src="lib/jquery-ui-1.13.2.min.js"></script>
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<script src="lib/three_0.137.0.min.js"></script>
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<script src="icn3d_3.28.1.min.js"></script>
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<script src="lib/three_0.151.0.min.js"></script>
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<script src="icn3d_3.28.2.min.js"></script>
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<script type="text/javascript">
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$( document ).ready(async function() {
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alert("IE does NOT work with the current iCn3D version 3. The old iCn3D version 2 is used instead.");
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}
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else {
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//$.getScript('icn3d_3.28.1.min.js', function() {
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//$.getScript('icn3d_3.28.2.min.js', function() {
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var version = 3;
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await launchIcn3d(version);
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//});

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