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Merge branch 'main' of https://github.com/oracle/accelerated-data-science into ODSC-48359/job_mount_file_system_doc
2 parents 37c7ddf + abb3140 commit 78cd84a

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‎.github/workflows/create-more-space/action.yml‎

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# We are running out space on the disk, solution described here:
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# https://github.com/actions/runner-images/issues/2840#issuecomment-790492173
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name: "Create more disk space"
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description: "Removing some folders to create more disk space"
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runs:
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using: composite
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steps:
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- shell: bash
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run: |
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sudo rm -rf /usr/share/dotnet
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sudo rm -rf /opt/ghc
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sudo rm -rf "/usr/local/share/boost"
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sudo rm -rf "$AGENT_TOOLSDIRECTORY"

‎.github/workflows/run-unittests-default_setup.yml‎

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name: tests/unitary/default_setup/**
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name: "[Py3.8][Py3.9][Py3.10] tests/unitary/default_setup/**"
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on:
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workflow_dispatch:
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pull_request:
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branches:
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- main
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- "release/**"
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- develop
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paths:
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- "ads/**"
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- pyproject.toml
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- "**requirements.txt"
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- .github/workflows/run-unittests.yml
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- .github/workflows/run-unittests-default_setup.yml
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- ".github/workflows/run-unittests*.yml"
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# Cancel in progress workflows on pull_requests.
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# https://docs.github.com/en/actions/using-jobs/using-concurrency#example-using-a-fallback-value
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steps:
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- uses: actions/checkout@v3
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# Caching python libraries installed with pip
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# https://github.com/actions/cache/blob/main/examples.md#python---pip
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- uses: actions/cache@v3
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with:
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path: ~/.cache/pip
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key: ${{ runner.os }}-pip-${{ hashFiles('**/test-requirements.txt') }}
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restore-keys: |
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${{ runner.os }}-pip-
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- uses: actions/setup-python@v4
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with:
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python-version: ${{ matrix.python-version }}
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cache: "pip"
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cache-dependency-path: |
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pyproject.toml
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"**requirements.txt"
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- name: "Test config setup"
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shell: bash
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env:
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HOME_RUNNER_DIR: /home/runner
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run: |
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set -x # print commands that are executed
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mkdir -p "$HOME_RUNNER_DIR"/.oci
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openssl genrsa -out $HOME_RUNNER_DIR/.oci/oci_ads_user.pem 2048
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cat <<EOT >> "$HOME_RUNNER_DIR/.oci/config"
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[DEFAULT]
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user=ocid1.user.oc1..xxx
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fingerprint=00:00:00:00:00:00:00:00:00:00:00:00:00:00:00:00
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tenancy=ocid1.tenancy.oc1..xxx
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region=test_region
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key_file=$HOME_RUNNER_DIR/.oci/oci_ads_user.pem
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EOT
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ls -lha "$HOME_RUNNER_DIR"/.oci
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echo "Test config file:"
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cat $HOME_RUNNER_DIR/.oci/config
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- uses: ./.github/workflows/set-dummy-conf
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name: "Test config setup"
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- name: "Run default_setup tests folder ONLY with minimum ADS dependencies"
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timeout-minutes: 15

.github/workflows/run-unittests.yml renamed to .github/workflows/run-unittests-py38-cov-report.yml

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name: tests/unitary/**
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name: "[Py3.8][COV REPORT] tests/unitary/**"
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on:
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workflow_dispatch:
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pull_request:
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branches:
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- main
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- "release/**"
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- develop
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paths:
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- "ads/**"
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- pyproject.toml
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- "**requirements.txt"
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- .github/workflows/run-unittests.yml
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- .github/workflows/run-unittests-default_setup.yml
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- ".github/workflows/run-unittests*.yml"
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# Cancel in progress workflows on pull_requests.
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# https://docs.github.com/en/actions/using-jobs/using-concurrency#example-using-a-fallback-value
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jobs:
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test:
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name: python ${{ matrix.python-version }}, ${{ matrix.name }}
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name: python 3.8, ${{ matrix.name }}
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runs-on: ubuntu-latest
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timeout-minutes: 90
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strategy:
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fail-fast: false
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matrix:
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python-version: ["3.8", "3.9", "3.10"]
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test-path: ["tests/unitary/with_extras tests/unitary/default_setup", "tests/unitary/with_extras/model"]
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include:
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- test-path: "tests/unitary/with_extras tests/unitary/default_setup"
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ignore-path: "--ignore tests/unitary/with_extras/model --ignore tests/unitary/with_extras/feature_store"
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name: "unitary"
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- test-path: "tests/unitary/with_extras/model"
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name: "model"
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- python-version: "3.8"
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cov-reports: --cov=ads --cov-report=xml --cov-report=html
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steps:
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- uses: actions/checkout@v3
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# Caching python libraries installed with pip
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# https://github.com/actions/cache/blob/main/examples.md#python---pip
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- uses: actions/cache@v3
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with:
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path: ~/.cache/pip
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key: ${{ runner.os }}-pip-${{ hashFiles('**/dev-requirements.txt') }}
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restore-keys: |
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${{ runner.os }}-pip-
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- uses: ./.github/workflows/create-more-space
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name: "Create more disk space"
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- uses: actions/setup-python@v4
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with:
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python-version: ${{ matrix.python-version }}
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python-version: "3.8"
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cache: "pip"
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cache-dependency-path: |
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pyproject.toml
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"**requirements.txt"
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- name: "Test config setup"
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shell: bash
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env:
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HOME_RUNNER_DIR: /home/runner
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run: |
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set -x # print commands that are executed
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mkdir -p "$HOME_RUNNER_DIR"/.oci
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openssl genrsa -out $HOME_RUNNER_DIR/.oci/oci_ads_user.pem 2048
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cat <<EOT >> "$HOME_RUNNER_DIR/.oci/config"
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[DEFAULT]
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user=ocid1.user.oc1..xxx
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fingerprint=00:00:00:00:00:00:00:00:00:00:00:00:00:00:00:00
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tenancy=ocid1.tenancy.oc1..xxx
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region=test_region
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key_file=$HOME_RUNNER_DIR/.oci/oci_ads_user.pem
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EOT
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ls -lha "$HOME_RUNNER_DIR"/.oci
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echo "Test config file:"
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cat $HOME_RUNNER_DIR/.oci/config
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- uses: ./.github/workflows/set-dummy-conf
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name: "Test config setup"
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- name: "Test env setup"
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timeout-minutes: 20
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set -x # print commands that are executed
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# Setup project and tests folder for cov reports to not be overwritten by another parallel step
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if [[ ! -z "${{ matrix.cov-reports }}" ]]; then
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mkdir -p cov-${{ matrix.name }}
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cd cov-${{ matrix.name }}
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ln -s ../tests tests
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ln -s ../ads ads
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ln -s ../.coveragerc .coveragerc
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fi
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mkdir -p cov-${{ matrix.name }}
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cd cov-${{ matrix.name }}
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ln -s ../tests tests
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ln -s ../ads ads
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ln -s ../.coveragerc .coveragerc
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# Run tests
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python -m pytest -v -p no:warnings --durations=5 \
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-n auto --dist loadfile ${{ matrix.cov-reports }} \
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-n auto --dist loadfile --cov=ads --cov-report=xml --cov-report=html \
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${{ matrix.test-path }} ${{ matrix.ignore-path }}
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- name: "Save coverage files"
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uses: actions/upload-artifact@v3
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if: ${{ matrix.cov-reports }}
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with:
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name: cov-reports-${{ matrix.name }}
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path: |
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runs-on: ubuntu-latest
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continue-on-error: true
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needs: test
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if: ${{ success() }} && ${{ github.event.issue.pull_request }}
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if: ${{ success() }} && && github.event_name == 'pull_request'
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env:
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COMPARE_BRANCH: main
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‎.github/workflows/run-unittests-py39-py310.yml‎

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name: "[Py3.9][Py3.10] - tests/unitary/**"
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on:
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workflow_dispatch:
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pull_request:
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paths:
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- "ads/**"
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- pyproject.toml
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- "**requirements.txt"
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- ".github/workflows/run-unittests*.yml"
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# Cancel in progress workflows on pull_requests.
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# https://docs.github.com/en/actions/using-jobs/using-concurrency#example-using-a-fallback-value
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concurrency:
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group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
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cancel-in-progress: true
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permissions:
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contents: read
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pull-requests: write
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# hack for https://github.com/actions/cache/issues/810#issuecomment-1222550359
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env:
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SEGMENT_DOWNLOAD_TIMEOUT_MINS: 5
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jobs:
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test:
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name: python ${{ matrix.python-version }}, ${{ matrix.name }}
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runs-on: ubuntu-latest
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timeout-minutes: 90
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strategy:
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fail-fast: false
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matrix:
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python-version: ["3.9", "3.10"]
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test-path: ["tests/unitary/with_extras tests/unitary/default_setup", "tests/unitary/with_extras/model"]
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include:
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- test-path: "tests/unitary/with_extras tests/unitary/default_setup"
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ignore-path: "--ignore tests/unitary/with_extras/model --ignore tests/unitary/with_extras/feature_store"
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name: "unitary"
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- test-path: "tests/unitary/with_extras/model"
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name: "model"
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steps:
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- uses: actions/checkout@v3
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- uses: ./.github/workflows/create-more-space
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name: "Create more disk space"
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- uses: actions/setup-python@v4
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with:
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python-version: ${{ matrix.python-version }}
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cache: "pip"
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cache-dependency-path: |
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pyproject.toml
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"**requirements.txt"
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- uses: ./.github/workflows/set-dummy-conf
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name: "Test config setup"
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- name: "Test env setup"
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timeout-minutes: 20
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shell: bash
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run: |
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set -x # print commands that are executed
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sudo apt-get install libkrb5-dev graphviz
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$CONDA/bin/conda init
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source /home/runner/.bashrc
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pip install -r dev-requirements.txt
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- name: "Run unitary tests folder with maximum ADS dependencies"
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timeout-minutes: 60
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shell: bash
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env:
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CONDA_PREFIX: /usr/share/miniconda
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run: |
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set -x # print commands that are executed
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# Run tests
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python -m pytest -v -p no:warnings --durations=5 \
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-n auto --dist loadfile \
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${{ matrix.test-path }} ${{ matrix.ignore-path }}

‎.github/workflows/set-dummy-conf/action.yml‎

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# This composite action is to avoid duplicating code across test actions.
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# Ref: https://docs.github.com/en/actions/creating-actions/creating-a-composite-action
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name: "Create dummy oci config"
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description: "Creates dummy oci config folder in ~/.oci"
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runs:
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using: composite
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steps:
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- shell: bash
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env:
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HOME_RUNNER_DIR: /home/runner
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run: |
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set -x # print commands that are executed
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mkdir -p "$HOME_RUNNER_DIR"/.oci
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openssl genrsa -out $HOME_RUNNER_DIR/.oci/oci_ads_user.pem 2048
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cat <<EOT >> "$HOME_RUNNER_DIR/.oci/config"
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[DEFAULT]
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user=ocid1.user.oc1..xxx
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fingerprint=00:00:00:00:00:00:00:00:00:00:00:00:00:00:00:00
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tenancy=ocid1.tenancy.oc1..xxx
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region=test_region
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key_file=$HOME_RUNNER_DIR/.oci/oci_ads_user.pem
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EOT
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ls -lha "$HOME_RUNNER_DIR"/.oci
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echo "Test config file:"
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cat $HOME_RUNNER_DIR/.oci/config

‎.pre-commit-config.yaml‎

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rev: v8.17.0
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hooks:
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- id: gitleaks
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exclude: .github/workflows/reusable-actions/set-dummy-conf.yml
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# Oracle copyright checker
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- repo: https://github.com/oracle-samples/oci-data-science-ai-samples/
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rev: cbe0136f7aaffe463b31ddf3f34b0e16b4b124ff

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