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Dont fail if transgene finds zero actionable mutations (resolves #214) #289

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Dont fail if transgene finds zero actionable mutations (resolves #214) #289

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@davidstew davidstew commented May 21, 2018

Resolves #214

If provided with an empty VCF file, Transgene will return None. If Transgene returns None, all subsequent tools which rely on Transgene’s return value return None as well.

@ghost ghost assigned davidstew May 21, 2018
@ghost ghost added the in progress label May 21, 2018
Handle cases with no actionable mutations (resolves #214)
9726a95 
resolves #214

ProTECT now fails gracefully if Transgene receives an empty file,
 Transgene finds no actionable mutations, or merge_mhc_peptide_calls
produces no peptides. This is done by propagating a None value.
@davidstew davidstew force-pushed the 214-dont-fail-if-transgene-finds-zero-actionable-mutations branch from 17e489b to 9726a95 Compare May 26, 2018 02:26
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