Interoperability with other platforms and tools

Interoperability is key in the new era of genomic epidemiology

MicrobeTrace has been integrated with other tools/platforms for maximum synergy. Users of these platforms can view their data in MicrobeTrace with the click of a button.

• GHOST (CDC only) For Hepatitis data processing and analysis)

• SEDRIC which is part of the DCIPHER platform (for foodborne pathogen data analysis)

• USHeR ( Ultra Fast Sample Placement on Existing Tree, for quick typing of SARS CoV-2 sequences

• Nextstrain

• Terra Bio

While analyzing data using Terra, you can use the KSNP3 workflow to generate Newick trees from your bacterial genomes which can then be visualized in MicrobeTrace Watch this training video