beast3 migration progress

Maven releases

The jar files of the following packages are available in Maven Cental noew. But full migration may still require updates to tests, example XMLs, or BEAUti templates.

• beast3
• BEASTLabs
• beast-classic
• CoupledMCMC (https://github.com/CompEvol)
• flc
• Mascot (https://github.com/CompEvol)
• morph-models
• sampled-ancestors

CompEvol releases on Maven Central: https://central.sonatype.com/namespace/io.github.compevol

Beast2-Dev releases on Maven Central: https://central.sonatype.com/namespace/io.github.beast2-dev

FLC release on Maven Central: https://central.sonatype.com/search?q=io.github.4ment

Master/Main branch complied

Note: these packages are only compile-tested, using mvn clean install -DskipTests. Full migration may still require updates to tests, example XMLs, or BEAUti templates.

• MutableAlignment
• ORC

TODO

If the pull request or branch isn't merged into the master branch, the package still counts as TODO.

https://compevol.github.io/CBAN/

Guide

https://github.com/CompEvol/beast3/blob/master/scripts/migration-guide.md

BEAST 3 Package Skeleton: https://github.com/CompEvol/beast-package-skeleton

Snapshot releases in Github

https://github.com/orgs/CompEvol/packages