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@Teichlab

Teichmann Group

Sarah Teichmann's group at University of Cambridge: Cambridge Stem Cell Institute & Department of Medicine

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  1. celltypist celltypist Public

    A tool for semi-automatic cell type classification

    Python 440 54

  2. cellhint cellhint Public

    A tool for semi-automatic cell type harmonization and integration

    Python 117 15

  3. drug2cell drug2cell Public

    Gene group activity utility functions for Scanpy

    Jupyter Notebook 99 4

  4. bin2cell bin2cell Public

    Join subcellular Visium HD bins into cells

    Python 131 13

  5. Genes2Genes Genes2Genes Public

    Aligning gene expression trajectories of single-cell reference and query systems

    Jupyter Notebook 80 12

  6. cell2tcr cell2tcr Public

    Inference of TCR motifs

    Jupyter Notebook 32 3

Repositories

Showing 10 of 73 repositories
  • celltypist Public

    A tool for semi-automatic cell type classification

    Teichlab/celltypist’s past year of commit activity
    Python 440 MIT 54 43 2 Updated Dec 29, 2025
  • celcomen Public
    Teichlab/celcomen’s past year of commit activity
    Jupyter Notebook 18 GPL-3.0 1 0 0 Updated Dec 10, 2025
  • csd3-scripts Public

    Various utility scripts for CSD3 survival

    Teichlab/csd3-scripts’s past year of commit activity
    Python 1 0 0 0 Updated Dec 5, 2025
  • celltypist_wiki Public

    Materials and scripts for building cell type encyclopedia table

    Teichlab/celltypist_wiki’s past year of commit activity
    Python 20 3 0 0 Updated Dec 2, 2025
  • ega-meta-harvest Public

    Gather EGAF-EGAN-EGAX metadata for EGA data released from Sanger

    Teichlab/ega-meta-harvest’s past year of commit activity
    Python 0 0 0 0 Updated Nov 21, 2025
  • bin2cell Public

    Join subcellular Visium HD bins into cells

    Teichlab/bin2cell’s past year of commit activity
    Python 131 MIT 13 8 0 Updated Nov 4, 2025
  • sctk Public
    Teichlab/sctk’s past year of commit activity
    Python 44 GPL-3.0 8 1 1 Updated Nov 3, 2025
  • cellhint Public

    A tool for semi-automatic cell type harmonization and integration

    Teichlab/cellhint’s past year of commit activity
    Python 117 MIT 15 6 0 Updated Nov 3, 2025
  • PanGIAtlas Public

    Integration of gut cell atlases

    Teichlab/PanGIAtlas’s past year of commit activity
    Jupyter Notebook 32 GPL-3.0 8 2 0 Updated Oct 29, 2025
  • TissueTag Public

    Python package to interactively annotate histological images within a jupyter notebook

    Teichlab/TissueTag’s past year of commit activity
    Jupyter Notebook 18 BSD-3-Clause 2 1 0 Updated Oct 20, 2025