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@artic-network

ARTICnetwork

This is the ARTICnetwork project, a Wellcome Trust funded project to provide a system for real-time genomic epidemiology of virus outbreaks.

Popular repositories Loading

  1. artic-ncov2019 artic-ncov2019 Public

    ARTIC nanopore protocol for nCoV2019 novel coronavirus

    Python 170 163

  2. fieldbioinformatics fieldbioinformatics Public

    Forked from zibraproject/zika-pipeline

    The ARTIC fieldbioinformatics pipeline

    Python 130 71

  3. rampart rampart Public

    Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

    JavaScript 82 34

  4. civet civet Public

    Cluster Investigation & Virus Epidemiology Tool

    Python 50 15

  5. primer-schemes primer-schemes Public

    Primer schemes for real-time genome epidemiology

    Python 30 42

  6. primalscheme3 primalscheme3 Public

    Primalscheme3. Generation of highly multiplex primerschemes

    HTML 22 9

Repositories

Showing 10 of 50 repositories
  • peartree Public
    artic-network/peartree’s past year of commit activity
    JavaScript 8 MIT 0 0 0 Updated Mar 2, 2026
  • amplicon-nf Public

    Amplicon genome assembly for ARTIC style primer schemes using Nextflow.

    artic-network/amplicon-nf’s past year of commit activity
    Nextflow 9 MIT 5 3 2 Updated Feb 26, 2026
  • artic-doc Public
    artic-network/artic-doc’s past year of commit activity
    HTML 0 5 3 0 Updated Feb 25, 2026
  • raccoon Public
    artic-network/raccoon’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 25, 2026
  • fieldbioinformatics Public Forked from zibraproject/zika-pipeline

    The ARTIC fieldbioinformatics pipeline

    artic-network/fieldbioinformatics’s past year of commit activity
    Python 130 MIT 91 5 0 Updated Feb 24, 2026
  • table-top Public

    System for delivering documents and data in an interactive training exercise

    artic-network/table-top’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Feb 18, 2026
  • viz Public
    artic-network/viz’s past year of commit activity
    HTML 0 0 0 0 Updated Feb 11, 2026
  • glacier-catalogue Public

    A catalogue of workflow repos available for Glacier application

    artic-network/glacier-catalogue’s past year of commit activity
    0 0 0 0 Updated Feb 9, 2026
  • sealion Public

    Sequenece alignment viewer

    artic-network/sealion’s past year of commit activity
    JavaScript 1 0 1 0 Updated Jan 14, 2026
  • beast-nf Public
    artic-network/beast-nf’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 8, 2026
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