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@idekerlab

UC, San Diego Trey Ideker Lab

Bioinformatics software projects developed by UCSD Trey Ideker lab

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  1. DCell DCell Public

    DCell browser and gene deletion simulator

    JavaScript 124 34

  2. hiview hiview Public

    HiView: the universal viewer for hierarchical data

    JavaScript 16 7

  3. vizbi-2015 vizbi-2015 Public

    Sample data and notebooks for VIZBI 2015 tutorial session

    5 12

  4. Network_Evaluation_Tools Network_Evaluation_Tools Public

    Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.

    Jupyter Notebook 33 19

  5. pyNBS pyNBS Public

    Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)

    Jupyter Notebook 37 22

Repositories

Showing 10 of 182 repositories
  • cellmaps_coembedding Public
    idekerlab/cellmaps_coembedding’s past year of commit activity
    Python 0 MIT 2 1 0 Updated Feb 6, 2026
  • MutationProjector Public

    Source code for MutationProjector

    idekerlab/MutationProjector’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jan 27, 2026
  • G2PT Public
    idekerlab/G2PT’s past year of commit activity
    Jupyter Notebook 18 MIT 5 3 0 Updated Jan 17, 2026
  • cansrmapp Public
    idekerlab/cansrmapp’s past year of commit activity
    Python 0 0 0 0 Updated Dec 22, 2025
  • cellmaps_pipeline Public
    idekerlab/cellmaps_pipeline’s past year of commit activity
    Python 15 MIT 2 0 0 Updated Dec 3, 2025
  • cellmaps_hierarchyeval Public

    Code for hierarchy evaluation

    idekerlab/cellmaps_hierarchyeval’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Dec 3, 2025
  • cellmaps_generate_hierarchy Public
    idekerlab/cellmaps_generate_hierarchy’s past year of commit activity
    Python 0 MIT 2 1 0 Updated Dec 3, 2025
  • cellmaps_image_embedding Public
    idekerlab/cellmaps_image_embedding’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Nov 13, 2025
  • cellmaps_ppidownloader Public
    idekerlab/cellmaps_ppidownloader’s past year of commit activity
    Python 0 MIT 1 2 0 Updated Nov 10, 2025
  • cellmaps_imagedownloader Public
    idekerlab/cellmaps_imagedownloader’s past year of commit activity
    Python 0 MIT 1 5 0 Updated Nov 10, 2025
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