echo '#define HAVE_LIBBZ2 1' >> config.h
echo '#define HAVE_LIBLZMA 1' >> config.h
echo '#ifndef __APPLE__' >> config.h
echo '#define HAVE_LZMA_H 1' >> config.h
echo '#endif' >> config.h
echo '#define HAVE_DRAND48 1' >> config.h
echo '#define HAVE_LIBCURL 1' >> config.h
if [ "x1" != "x" ]; then \
    echo '#define HAVE_DECL___CPUID_COUNT 1' >> config.h ; \
    echo '#define HAVE_DECL___GET_CPUID_MAX 1' >> config.h ; \
fi
if [ "x1" != "x" ]; then \
    echo '#define HAVE_POPCNT 1' >> config.h ; \
    echo '#define HAVE_SSE4_1 1' >> config.h ; \
    echo '#define HAVE_SSSE3 1' >> config.h ; \
    echo '#if defined(HTS_ALLOW_UNALIGNED) && HTS_ALLOW_UNALIGNED == 0' >> config.h ; \
    echo '#define UBSAN 1' >> config.h ; \
    echo '#endif' >> config.h ; \
fi
if [ "x1" != "x" ] ; then \
    echo '#define HAVE_AVX2 1' >> config.h ; \
fi
if [ "x1" != "x" ] ; then \
    echo '#define HAVE_AVX512 1' >> config.h ; \
fi
echo '#if defined __x86_64__ || defined __arm__ || defined __aarch64__' >> config.h
echo '#define HAVE_ATTRIBUTE_CONSTRUCTOR 1' >> config.h
echo '#endif' >> config.h
echo '#if (defined(__x86_64__) || defined(_M_X64))' >> config.h
echo '#define HAVE_ATTRIBUTE_TARGET_SSSE3 1' >> config.h
echo '#define HAVE_BUILTIN_CPU_SUPPORT_SSSE3 1' >> config.h
echo '#endif' >> config.h
echo '#if defined __linux__' >> config.h
echo '#define HAVE_GETAUXVAL' >> config.h
echo '#elif defined __FreeBSD__' >> config.h
echo '#define HAVE_ELF_AUX_INFO' >> config.h
echo '#elif defined __OpenBSD__' >> config.h
echo '// Enable extra OpenBSD checks (see simd.c)' >> config.h
echo '#define HAVE_OPENBSD' >> config.h
echo '#endif' >> config.h
gcc -g -O2 -Wall -Werror -fvisibility=hidden  -I.  -c -o test/usepublic.o test/usepublic.cpp
test/maintainer/check_copyright.pl .
test/maintainer/check_spaces.pl .
make -j 4 $MAKE_OPTS
gcc -g -O2 -Wall -Werror -fvisibility=hidden  -I.  -c -o kfunc.o kfunc.c
gcc -g -O2 -Wall -Werror -fvisibility=hidden  -I.  -c -o kstring.o kstring.c
gcc -g -O2 -Wall -Werror -fvisibility=hidden  -I.  -c -o bcf_sr_sort.o bcf_sr_sort.c
gcc -g -O2 -Wall -Werror -fvisibility=hidden  -I.  -c -o bgzf.o bgzf.c
bgzf.c:47:10: fatal error: isa-l.h: No such file or directory
   47 | #include <isa-l.h>
      |          ^~~~~~~~~
compilation terminated.
make: *** [Makefile:194: bgzf.o] Error 1
make: *** Waiting for unfinished jobs....

Exit status: 2