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Pull requests: scverse/anndata

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Pull requests list

Backport PR #2408 on branch 0.12.x (fix: benchmark timeout for too much outer joins on concat) benchmark skip-gpu-ci
#2409 opened Apr 22, 2026 by meeseeksmachine Contributor Loading… 0.12.12
2
refactor: allow multi-indexed backed mode skip-gpu-ci
#2407 opened Apr 22, 2026 by ilan-gold Contributor • Draft
3 tasks done
0.13.0
1
fix: disallow copy for "backed" objects skip-gpu-ci
#2406 opened Apr 22, 2026 by ilan-gold Contributor Loading…
2 of 3 tasks
0.13.0
1
simplify usage of AlignedMappingProperty
#2405 opened Apr 22, 2026 by ilia-kats Contributor Loading…
1 of 3 tasks
1
feat(utils): expose STANDARD_SECTIONS as the canonical section order
#2402 opened Apr 21, 2026 by katosh Contributor Loading…
3 tasks done
1
1
feat: custom in-memory indexes
#2379 opened Mar 31, 2026 by ilan-gold Contributor • Draft
2 of 3 tasks
1
Removed scheduler from da.store as this works regardless of scheduler
#2376 opened Mar 25, 2026 by joshua-gould Contributor Loading…
1
feat: upgrade to zarr v3 sharding default skip-gpu-ci
#2368 opened Mar 18, 2026 by ilan-gold Contributor Loading…
2 of 3 tasks
0.12.12
1
@ilan-gold
3
Enable write to existing zarr store
#2366 opened Mar 16, 2026 by joshua-gould Contributor Loading…
2
Replace use_cuda with device parameter in AnnLoader
#2360 opened Mar 9, 2026 by LiudengZhang Contributor Loading…
4 tasks done
7
feat: "backed" mode for read_lazy
#2357 opened Feb 27, 2026 by ilan-gold Contributor • Draft
8 tasks
1
1
feat: mlx compat
#2334 opened Feb 6, 2026 by ilan-gold Contributor • Draft
5 tasks
0.13.0
1
feat: DataFrame API for custom obs and var skip-gpu-ci
#2328 opened Feb 4, 2026 by ilan-gold Contributor • Draft
2 of 8 tasks
0.13.0
2
5
feat: add LazyCategoricalDtype for lazy categorical columns
#2288 opened Jan 8, 2026 by katosh Contributor Loading…
3 tasks done
1
41
feat: allow reading nullable arrays without mask on disk
#2279 opened Jan 5, 2026 by flying-sheep Member • Draft
3 tasks
0.13.0
1
chore: upgrade to cupy-cuda13
#2269 opened Dec 30, 2025 by ilan-gold Contributor Loading…
3 tasks
0.13.0
1
chore(deps): bump actions/cache from 4 to 5 no milestone skip-gpu-ci
#2251 opened Dec 15, 2025 by dependabot Bot Loading…
1
feat: Add HTML representation
#2236 opened Nov 29, 2025 by katosh Contributor Loading…
2 of 3 tasks
0.13.0
1
40
chore: add type annotation
#2229 opened Nov 19, 2025 by szabgab Contributor Loading…
1
ci: use codecov flags
#2217 opened Nov 11, 2025 by flying-sheep Member • Draft 0.12.12
1
Pa/name-conventions
#2208 opened Nov 6, 2025 by flying-sheep Member • Draft
3 tasks
1
feat: create parent dirs when writing into h5ad
#2186 opened Oct 30, 2025 by marcfranquesa Loading…
3
Add type-checking
#2174 opened Oct 25, 2025 by szabgab Contributor Loading…
3 tasks done
19
Add batch_converter hook + multiprocessing support to experimental.pytorch.AnnLoader
#2135 opened Sep 29, 2025 by ronamit Loading…
fix: allow categorical index in read_lazy skip-gpu-ci
#2062 opened Jul 29, 2025 by ilan-gold Contributor Loading…
3 tasks
0.12.12
4
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