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fix: allow read_10x_mtx to read numeric gene IDs#3932

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flying-sheep merged 4 commits intomainfrom
pa/10x-numeric-genes
Jan 6, 2026
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fix: allow read_10x_mtx to read numeric gene IDs#3932
flying-sheep merged 4 commits intomainfrom
pa/10x-numeric-genes

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codecov Bot commented Dec 23, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 76.93%. Comparing base (b103908) to head (1777014).
⚠️ Report is 43 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #3932      +/-   ##
==========================================
+ Coverage   76.91%   76.93%   +0.02%     
==========================================
  Files         117      117              
  Lines       12460    12460              
==========================================
+ Hits         9583     9586       +3     
+ Misses       2877     2874       -3     
Flag Coverage Δ
hatch-test.pre 76.93% <100.00%> (+0.02%) ⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines Coverage Δ
src/scanpy/readwrite.py 77.30% <100.00%> (+0.70%) ⬆️

@flying-sheep flying-sheep requested a review from ilan-gold January 5, 2026 11:43
@flying-sheep flying-sheep merged commit 3cf6391 into main Jan 6, 2026
14 checks passed
@flying-sheep flying-sheep deleted the pa/10x-numeric-genes branch January 6, 2026 12:00
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read_10x_mtx cannot deal with numerical gene symbols

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