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[MACSIMA] Parsing cycle number from filename doesnt work for renamed files

Status: Open.

#348 In scverse/spatialdata-io;

· MSHelm opened on Dec 10, 2025

Anndata compatible version with spatialdata-io 5.1/5.0

Status: Open.

#346 In scverse/spatialdata-io;

· AtlasMaroc opened on Nov 18, 2025

Use scverse template

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#345 In scverse/spatialdata-io;

· Zethson opened on Nov 14, 2025

Improve the contribution guide by adding some examples

Status: Open.

#340 In scverse/spatialdata-io;

· LucaMarconato opened on Nov 1, 2025

PyArrow OSError: Unexpected end of stream

Status: Open.

#334 In scverse/spatialdata-io;

· LucaMarconato opened on Oct 27, 2025

Xenium read error

Status: Open.

#325 In scverse/spatialdata-io;

· SirKuikka opened on Sep 17, 2025

How to read BGI's STOmics spatial transcriptomics data?

Status: Open.

#322 In scverse/spatialdata-io;

· timtreis opened on Sep 7, 2025

Recommended approach for reading multiple Xenium slides with mutual panel at once

Status: Open.

#319 In scverse/spatialdata-io;

· matt-sd-watson opened on Sep 2, 2025

ENHANCEMENT: to_legacy_anndata support with region > 1

Status: Open.

#318 In scverse/spatialdata-io;

· gboscagli opened on Sep 1, 2025

Cosmx reader: CellOverlay is skipped

Status: Open.

#313 In scverse/spatialdata-io;

· StevenWijnen opened on Aug 11, 2025

<code>xenium_aligned_image</code> assumes the image has 3 or 4 channels

Status: Open.

#311 In scverse/spatialdata-io;

· quentinblampey opened on Jul 31, 2025

Unable to read xenium data

Status: Open.

#309 In scverse/spatialdata-io;

· RiyaPodder opened on Jun 30, 2025