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@snakemake

Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.7k 634

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 240 208

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 182 32

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    62 15

  5. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 48 47

  6. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 37 11

Repositories

Showing 10 of 66 repositories
  • snakemake-report-plugin-nanopub Public

    Snakemake Report Plugin to automatically create Nanopubs after workflow runs holding all metadata of that workflow

    snakemake/snakemake-report-plugin-nanopub’s past year of commit activity
    Python 1 MIT 0 0 2 Updated Mar 17, 2026
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake’s past year of commit activity
    Python 2,725 MIT 634 1,073 (1 issue needs help) 120 Updated Mar 17, 2026
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    snakemake/snakemake-wrappers’s past year of commit activity
    Python 240 208 8 27 Updated Mar 17, 2026
  • snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    snakemake/snakemake-workflow-catalog’s past year of commit activity
    Python 37 MIT 11 4 0 Updated Mar 17, 2026
  • snakemake-storage-plugin-http Public

    Snakemake storage plugin for donwloading input files from HTTP(s).

    snakemake/snakemake-storage-plugin-http’s past year of commit activity
    Python 1 MIT 4 3 4 Updated Mar 16, 2026
  • snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    snakemake/snakemake-executor-plugin-slurm’s past year of commit activity
    Python 48 MIT 47 41 5 Updated Mar 16, 2026
  • snakemake-interface-storage-plugins Public

    This package provides a stable interface for interactions between Snakemake and its storage plugins.

    snakemake/snakemake-interface-storage-plugins’s past year of commit activity
    Python 2 MIT 11 4 3 Updated Mar 16, 2026
  • snakemake-executor-plugin-slurm-jobstep Public

    A Snakemake executor plugin for running srun jobs inside of SLURM jobs (meant for internal use by snakemake-executor-plugin-slurm)

    snakemake/snakemake-executor-plugin-slurm-jobstep’s past year of commit activity
    Python 0 MIT 6 0 2 Updated Mar 16, 2026
  • snakemake-wasm-app Public
    snakemake/snakemake-wasm-app’s past year of commit activity
    Shell 1 0 0 0 Updated Mar 14, 2026
  • snakemake-interface-common Public

    Common functions and classes for Snakemake and its plugins

    snakemake/snakemake-interface-common’s past year of commit activity
    Python 0 MIT 7 5 5 Updated Mar 13, 2026
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