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@sourmash-bio

sourmash, for large-scale biological sequence search!

Quickly search, compare, and analyze genomic and metagenomic data sets.

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  1. sourmash sourmash Public

    Quickly search, compare, and analyze genomic and metagenomic data sets.

    Python 530 88

  2. branchwater branchwater Public

    Searching large collections of sequencing data with genome-scale queries

    HTML 16 3

  3. wort wort Public

    A database for signatures of public genomic sources

    Python 18 3

  4. sourmash_plugin_branchwater sourmash_plugin_branchwater Public

    fast, multithreaded sourmash operations: search, compare, and gather.

    Python 25 5

  5. database-examples database-examples Public

    Example workflows and useful scripts for building your own sourmash databases

    Python 2

  6. sourmash-mixers sourmash-mixers Public

    A meta-package to install a number of sourmash plugins!

    4

Repositories

Showing 10 of 42 repositories
  • wort Public

    A database for signatures of public genomic sources

    sourmash-bio/wort’s past year of commit activity
    Python 18 3 25 4 Updated Dec 10, 2025
  • sourmash_plugin_branchwater Public

    fast, multithreaded sourmash operations: search, compare, and gather.

    sourmash-bio/sourmash_plugin_branchwater’s past year of commit activity
    Python 25 AGPL-3.0 5 113 20 Updated Dec 9, 2025
  • sourmash Public

    Quickly search, compare, and analyze genomic and metagenomic data sets.

    sourmash-bio/sourmash’s past year of commit activity
    Python 530 88 761 (4 issues need help) 69 Updated Dec 9, 2025
  • 2024-ictv-challenge-sourmash Public
    sourmash-bio/2024-ictv-challenge-sourmash’s past year of commit activity
    Python 0 0 1 0 Updated Dec 7, 2025
  • sourmash_plugin_tables Public

    Tables is a python-based sourmash plugin to convert the standard output files from base sourmash into an OTU format. See README for more information.

    sourmash-bio/sourmash_plugin_tables’s past year of commit activity
    Python 0 BSD-3-Clause 0 2 0 Updated Dec 2, 2025
  • branchwater Public

    Searching large collections of sequencing data with genome-scale queries

    sourmash-bio/branchwater’s past year of commit activity
    HTML 16 3 31 6 Updated Dec 1, 2025
  • sourmash_plugin_directsketch Public
    sourmash-bio/sourmash_plugin_directsketch’s past year of commit activity
    Python 3 BSD-3-Clause 1 25 14 Updated Nov 24, 2025
  • sourmash_plugin_betterplot Public

    Improved plotting/viz and cluster examination for sourmash

    sourmash-bio/sourmash_plugin_betterplot’s past year of commit activity
    Python 4 BSD-3-Clause 0 28 2 Updated Sep 22, 2025
  • 2025-sourmash-databases-doc-template Public

    Template structure for building new sourmash database doc files

    sourmash-bio/2025-sourmash-databases-doc-template’s past year of commit activity
    Python 0 BSD-3-Clause 0 1 0 Updated Aug 5, 2025
  • 2025-validate-sourmash-tax-formats Public

    Validation workflow for outputs of `sourmash tax`

    sourmash-bio/2025-validate-sourmash-tax-formats’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jul 31, 2025
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