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@stjude-rust-labs

St. Jude Rust Labs

St. Jude's experimental Rust tools for the omics community.

St. Jude Rust Labs

St. Jude Rust Labs is a project at St. Jude Children's Research Hospital aimed at building a better foundation for omics analysis using Rust. See the individual repositories below for more information on what we're working on!

Disclaimer

St. Jude Rust Labs’ crates and command line applications may be used only for educational and basic research purposes and not for any other purpose. St. Jude Rust Labs’ crates and command line applications may not be used for diagnosis, medical care, or treatment of any patient, or for decision-making about any person (including assignment to a study or specific study arm or group), or to render medical advice or professional services. St. Jude Rust Labs’ crates and command line applications have not received approval or clearance by the U.S. Food and Drug Administration (FDA) or otherwise. St. Jude Rust Labs’ crates and command line applications are intended only to assist in research but not in decision-making about patients or research participants. The authors of the Rust Labs’ crates and command lines applications have no responsibility for any decisions made in the use of the crates and command line applications.

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  1. fq fq Public

    Command line utility for manipulating Illumina-generated FASTQ files.

    Rust 95 5

  2. sprocket sprocket Public

    A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

    Rust 108 31

  3. crankshaft crankshaft Public

    A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.

    Rust 45 22

  4. sprocket-vscode sprocket-vscode Public

    Visual Studio Code extension for Sprocket.

    TypeScript 9 8

  5. sprocket-action sprocket-action Public

    Run Sprocket as part of a CI/CD pipeline with GitHub Actions.

    Shell 6 2

  6. planetary planetary Public

    A Kubernetes-based task executor for the Task Execution Service (TES) specification

    Rust 17 3

Repositories

Showing 10 of 16 repositories
  • planetary Public

    A Kubernetes-based task executor for the Task Execution Service (TES) specification

    stjude-rust-labs/planetary’s past year of commit activity
    Rust 17 Apache-2.0 3 4 1 Updated Jan 6, 2026
  • sprocket Public

    A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

    stjude-rust-labs/sprocket’s past year of commit activity
    Rust 108 Apache-2.0 31 69 (1 issue needs help) 14 Updated Dec 30, 2025
  • sprocket-vscode Public

    Visual Studio Code extension for Sprocket.

    stjude-rust-labs/sprocket-vscode’s past year of commit activity
    TypeScript 9 Apache-2.0 8 1 0 Updated Dec 20, 2025
  • fq Public

    Command line utility for manipulating Illumina-generated FASTQ files.

    stjude-rust-labs/fq’s past year of commit activity
    Rust 95 MIT 5 5 0 Updated Dec 18, 2025
  • crankshaft Public

    A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.

    stjude-rust-labs/crankshaft’s past year of commit activity
    Rust 45 Apache-2.0 22 4 2 Updated Dec 17, 2025
  • cloud-copy Public

    A cloud storage copy library and utility.

    stjude-rust-labs/cloud-copy’s past year of commit activity
    Rust 2 Apache-2.0 1 0 0 Updated Dec 10, 2025
  • rfcs Public

    Requests For Comments for the St. Jude Rust Labs project

    stjude-rust-labs/rfcs’s past year of commit activity
    Shell 1 Apache-2.0 0 0 3 Updated Dec 7, 2025
  • http-cache-stream Public

    A HTTP cache that supports streaming bodies.

    stjude-rust-labs/http-cache-stream’s past year of commit activity
    Rust 4 Apache-2.0 2 1 0 Updated Nov 6, 2025
  • omics Public

    Foundations for the Rust omics ecosystem.

    stjude-rust-labs/omics’s past year of commit activity
    Rust 12 Apache-2.0 0 1 0 Updated Oct 20, 2025
  • wdl Public archive

    Rust crates for working with Workflow Description Language (WDL) documents.

    stjude-rust-labs/wdl’s past year of commit activity
    Rust 62 Apache-2.0 36 0 (1 issue needs help) 1 Updated Sep 23, 2025

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